光学学报, 2019, 39 (2): 0217001, 网络出版: 2019-05-10
用于在线E-FRET定量成像的自动背景识别与数据筛选 下载: 746次
Automatic Background Recognition and Data Selection for Online Quantitative E-FRET Imaging
成像系统 荧光共振能量转移 背景识别 布尔模板 在线测量 定量成像 imaging system fluorescence resonance energy transfer background recognition Boolean template online measurement quantitative imaging
摘要
因灵敏性高、无损伤和测量速度快等特性,基于3-cube的荧光能量共振转移(E-FRET)显微成像术是目前最流行的活细胞定量FRET成像技术。为了实现活细胞在线实时FRET定量成像,首先提出了一种细胞图像背景自动识别与图像阈值设定的方法:逐像素统计灰度值出现的次数,第1个峰值处的灰度值确定为背景值;将背景值的β (经验常数)倍设为阈值,将扣除背景的供体激发供体探测通道图像和受体激发受体探测通道图像再次扣除阈值,负值置零后进行逻辑与运算制作用于数据筛选的布尔逻辑模板,并将其用于FRET效率和供受体浓度比的数据筛选。利用所提出的方法对转染了不同FRET质粒的细胞进行活细胞在线动态定量E-FRET成像,得到了与期望值一致的测量结果。
Abstract
Three-cube-based fluorescence resonance energy transfer (E-FRET) microscopy is the most popular live-cell quantitative FRET imaging technique owing to its high sensitivity, no damage and fast measurement speed. To realize live-cell online real-time quantitative FRET imaging, we propose an automatic cell imaging background recognition and threshold setting method that counts gray values of an image pixel by pixel and assign the first peak gray value in the corresponding gray value-count plot as the background. The β (the empirical constant) times of the background value are set as a threshold. The corrected donor-excitation and donor-detection, and acceptor-excitation and acceptor-detection images obtained by subtracting the corresponding threshold from the raw images are used to create a Boolean logic template for data filtering of the FRET efficiency and relative concentration ratio between the acceptor and the donor via logical and operation. The results obtained through online dynamic quantitative E-FRET images of live cells expressing different plasmids on our self-assembled automatic E-FRET microscope are consistent with the expected values.
孙晗, 陈同生. 用于在线E-FRET定量成像的自动背景识别与数据筛选[J]. 光学学报, 2019, 39(2): 0217001. Han Sun, Tongsheng Chen. Automatic Background Recognition and Data Selection for Online Quantitative E-FRET Imaging[J]. Acta Optica Sinica, 2019, 39(2): 0217001.