In this Letter, a method for shape visualization of small objects (microscopic) in the form of a hologram is presented. It consists of a standard optical set-up for small object registration (i.e., stereoscopic or biological microscope). The focus stacking technique is used to obtain a series of images with increased depth of field and on them a shape reconstruction procedure (structure from motion, SfM) is made. With use of a dense cloud of points, a sequence of parallax-related images suitable for Geola’s digital holographic printing is generated. The holographic printer produces single-parallax holographic (full three-dimensional) images of real or virtual objects.