Author Affiliations
Abstract
1 State Key Laboratory of Extreme Photonics and Instrumentation, College of Optical Science and Engineering, Zhejiang University, Hangzhou 310027, P. R. China
2 ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou 311200, P. R. China
3 Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, P. R. China
4 Advanced Biomedical Imaging Facility-Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P. R. China
Structured illumination microscopy (SIM) achieves super-resolution (SR) by modulating the high-frequency information of the sample into the passband of the optical system and subsequent image reconstruction. The traditional Wiener-filtering-based reconstruction algorithm operates in the Fourier domain, it requires prior knowledge of the sinusoidal illumination patterns which makes the time-consuming procedure of parameter estimation to raw datasets necessary, besides, the parameter estimation is sensitive to noise or aberration-induced pattern distortion which leads to reconstruction artifacts. Here, we propose a spatial-domain image reconstruction method that does not require parameter estimation but calculates patterns from raw datasets, and a reconstructed image can be obtained just by calculating the spatial covariance of differential calculated patterns and differential filtered datasets (the notch filtering operation is performed to the raw datasets for attenuating and compensating the optical transfer function (OTF)). Experiments on reconstructing raw datasets including nonbiological, biological, and simulated samples demonstrate that our method has SR capability, high reconstruction speed, and high robustness to aberration and noise.
Structured illumination microscopy image reconstruction spatial domain digital micromirror device (DMD) 
Journal of Innovative Optical Health Sciences
2024, 17(2): 2350021
马旺 1,2千佳 1王思颖 1马睿 1[ ... ]姚保利 1,2,**
作者单位
摘要
1 中国科学院西安光学精密机械研究所瞬态光学与光子技术国家重点实验室,陕西 西安 710119
2 中国科学院大学,北京 100049
将普通光学显微镜的均匀照明替换为光场具有空间结构分布的照明,可为显微镜增添超分辨和光切片的新功能。结构光照明显微(SIM)技术与传统宽场光学显微镜具有良好的结构兼容性,继承了传统光学显微镜非侵入、低光毒性、低荧光漂白、快速成像的优点。其高时空分辨率和三维光切片能力非常适合活体细胞或组织的观测,受到生物医学和光学界的持续关注。快速产生高对比度、高频率的结构光场并进行快速相移和旋转调控是SIM的核心技术。近年来基于数字微镜器件(DMD)调制的SIM(DMD-SIM)发展迅速,它利用DMD高刷新率、高光通量、偏振不敏感的优势,克服了传统器件如物理光栅和液晶空间光调制器在调控速度上的缺点。本综述首先介绍了SIM超分辨和光切片的基本原理,然后着重阐述了DMD-SIM通过光投影和光干涉产生结构光照明及调控光场的方法,对当前的DMD-SIM研究进展进行了归纳评述,总结了DMD-SIM的优缺点,最后对DMD-SIM面临的挑战和发展趋势进行了展望。
光学显微 结构光照明显微 超分辨 光切片 数字微镜器件 
激光与光电子学进展
2024, 61(6): 0618001
Author Affiliations
Abstract
1 Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen 518060, China
2 Key Laboratory of Opto-electronic Information Science and Technology of Jiangxi Province, Nanchang Hangkong University, Nanchang 330063, China
3 College of Physics and Optoelectronics Engineering, Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, Shenzhen University, Shenzhen 518060, China
4 Department of Bioengineering and COMSET, Clemson University, Clemson SC 29634, US
Wide-field linear structured illumination microscopy (LSIM) extends resolution beyond the diffraction limit by moving unresolvable high-frequency information into the passband of the microscopy in the form of moiré fringes. However, due to the diffraction limit, the spatial frequency of the structured illumination pattern cannot be larger than the microscopy cutoff frequency, which results in a twofold resolution improvement over wide-field microscopes. This Letter presents a novel approach in point-scanning LSIM, aimed at achieving higher-resolution improvement by combining stimulated emission depletion (STED) with point-scanning structured illumination microscopy (psSIM) (STED-psSIM). The according structured illumination pattern whose frequency exceeds the microscopy cutoff frequency is produced by scanning the focus of the sinusoidally modulated excitation beam of STED microscopy. The experimental results showed a 1.58-fold resolution improvement over conventional STED microscopy with the same depletion laser power.
stimulated emission depletion structured illumination microscopy superresolution microscopy 
Chinese Optics Letters
2024, 22(3): 031701
Yaning Li 1,2†Ruijie Cao 1,2Wei Ren 1,2Yunzhe Fu 1,2[ ... ]Peng Xi 1,2,*
Author Affiliations
Abstract
1 Peking University, College of Future Technology, Department of Biomedical Engineering, Beijing, China
2 Peking University, National Biomedical Imaging Center, Beijing, China
In recent years, notable progress has been achieved in both the hardware and algorithms of structured illumination microscopy (SIM). Nevertheless, the advancement of three-dimensional structured illumination microscopy (3DSIM) has been impeded by challenges arising from the speed and intricacy of polarization modulation. We introduce a high-speed modulation 3DSIM system, leveraging the polarization-maintaining and modulation capabilities of a digital micromirror device (DMD) in conjunction with an electro-optic modulator. The DMD-3DSIM system yields a twofold enhancement in both lateral (133 nm) and axial (300 nm) resolution compared to wide-field imaging and can acquire a data set comprising 29 sections of 1024 pixels × 1024 pixels, with 15 ms exposure time and 6.75 s per volume. The versatility of the DMD-3DSIM approach was exemplified through the imaging of various specimens, including fluorescent beads, nuclear pores, microtubules, actin filaments, and mitochondria within cells, as well as plant and animal tissues. Notably, polarized 3DSIM elucidated the orientation of actin filaments. Furthermore, the implementation of diverse deconvolution algorithms further enhances 3D resolution. The DMD-based 3DSIM system presents a rapid and reliable methodology for investigating biomedical phenomena, boasting capabilities encompassing 3D superresolution, fast temporal resolution, and polarization imaging.
digital micromirror device electro-optic modulation polarization three-dimensional structured illumination microscopy 
Advanced Photonics Nexus
2024, 3(1): 016001
作者单位
摘要
光切片结构光显微的三维测量速度一直是该技术应用方面的重要关注点。基于光切片的三维测量方法需要在同一个轴向位置进行至少两次曝光, 才能获得该位置的光切片信息。文章提出一种单次曝光的结构光显微三维测量方法, 在轴向扫描的每个位置只需拍摄一幅结构光显微图像, 相邻轴向位置的条纹存在一定的相移; 然后分析每个像素对应的轴向灰度曲线, 计算轴向调制度并定位峰值; 最后进行标定和换算, 便可得到样品的三维重建结果。实验证明, 所提方法可以得到与光切片方法相当的测量精度, 测量效率和图像处理效率都比光切片法有很大提升。
结构光显微 调制度分析 相移法 三维测量 structured illumination microscopy modulation analysis phase shifting method three-dimensional measurement 
光学技术
2023, 49(5): 596
谢贤峰 1,2千佳 1李星 1党诗沛 1[ ... ]姚保利 1,2,*
作者单位
摘要
1 中国科学院西安光学精密机械研究所 瞬态光学与光子技术国家重点实验室,西安 710119
2 中国科学院大学,北京 100049
光切片图像的质量与使用的重构算法直接相关,传统的均方根算法虽然简洁,但在原始图像信噪比和条纹对比度不高时重构效果不佳,得到的三维重建结果并不理想。针对该问题,提出一种去背景和去卷积相结合的光切片方法。与传统均方根算法相比,该方法能有效减少残留条纹,提高微小细节的可见性。实验搭建了一套基于数字微镜器件的结构照明显微系统,以小鼠肾脏细胞、牛肺动脉内皮细胞等为样品进行了光切片实验。实验结果表明,该方法能获得更好的光切片和三维成像效果。
结构光照明显微镜 光切片 三维显微成像 图像重构 标准差 Structured illumination microscopy Optical sectioning Three-dimensional optical microscopy Image reconstruction Standard deviation 
光子学报
2023, 52(11): 1110004
Yile Sun 1†Hongfei Zhu 2Lu Yin 3Hanmeng Wu 1[ ... ]Xu Liu 1,5,7
Author Affiliations
Abstract
1 Zhejiang University, College of Optical Science and Engineering, State Key Laboratory of Extreme Photonics and Instrumentation, Hangzhou, China
2 The Chinese University of Hong Kong, Department of Biomedical Engineering, Hong Kong, China
3 China Jiliang University, College of Optical and Electronic Technology, Hangzhou, China
4 Zhejiang University of Technology, Institute of Pharmacology, College of Pharmaceutical Sciences, Hangzhou, China
5 ZJU-Hangzhou Global Scientific and Technological Innovation Center, Hangzhou, China
6 Huazhong University of Science and Technology, Britton Chance Center for Biomedical Photonics-MoE Key Laboratory for Biomedical Photonics, Advanced Biomedical Imaging Facility-Wuhan National Laboratory for Optoelectronics, Wuhan, China
7 Shanxi University, Collaborative Innovation Center of Extreme Optics, Taiyuan, China
Imaging three-dimensional, subcellular structures with high axial resolution has always been the core purpose of fluorescence microscopy. However, trade-offs exist between axial resolution and other important technical indicators, such as temporal resolution, optical power density, and imaging process complexity. We report a new imaging modality, fluorescence interference structured illumination microscopy (FI-SIM), which is based on three-dimensional structured illumination microscopy for wide-field lateral imaging and fluorescence interference for axial reconstruction. FI-SIM can acquire images quickly within the order of hundreds of milliseconds and exhibit even 30 nm axial resolution in half the wavelength depth range without z-axis scanning. Moreover, the relatively low laser power density relaxes the requirements for dyes and enables a wide range of applications for observing fixed and live subcellular structures.
optical imaging super-resolution microscopy fluorescence interference structured illumination microscopy 
Advanced Photonics
2023, 5(5): 056007
Zewei Luo 1,2†Guodong Zang 1,2Ge Wu 1,2Mengting Kong 1,2[ ... ]Tongsheng Chen 1,2,*
Author Affiliations
Abstract
1 South China Normal University, College of Biophotonics, MOE Key Laboratory of Laser Life Science, Guangzhou, China
2 South China Normal University, College of Biophotonics, Guangdong Key Laboratory of Laser Life Science, Guangzhou, China
Structured illumination-based super-resolution Förster resonance energy transfer microscopy (SIM-FRET) provides an approach to resolving molecular behavior localized in intricate biological structures in living cells. However, SIM reconstruction artifacts will decrease the quantitative analysis fidelity of SIM-FRET signals. To address these issues, we have developed a method called HiFi spectrum optimization SIM-FRET (HiFi-SO-SIM-FRET), which uses optimized Wiener parameters in the two-step spectrum optimization to suppress sidelobe artifacts and achieve super-resolution quantitative SIM-FRET. We validated our method by demonstrating its ability to reduce reconstruction artifacts while maintaining the accuracy of FRET signals in both simulated FRET models and live-cell FRET-standard construct samples. In summary, HiFi-SO-SIM-FRET provides a promising solution for achieving high spatial resolution and reducing SIM reconstruction artifacts in quantitative FRET imaging.
super-resolution structured illumination microscopy Förster resonance energy transfer living cells quantitative measurement 
Advanced Photonics Nexus
2023, 2(5): 056008
作者单位
摘要
深圳大学物理与光电工程学院,深圳市光子学与生物光子学重点实验室,光电子器件与系统教育部/广东省重点实验室,广东 深圳 518060
为进一步提高双光子多焦点结构光照明显微技术(2P-MSIM)的空间分辨率,笔者提出并发展了一种双光子亚衍射多焦点结构光照明显微成像方法(2P-sMSIM)。首先,通过改进的Gerchberg-Saxton(GS)相位恢复算法设计亚衍射聚焦点阵,生成相位图,利用高速相位型空间光调制器产生亚衍射聚焦点阵。通过计算机模拟的仿真实验,探究算法的可行性,并通过对荧光染料溶液的激发成像,证明了每个亚衍射聚焦点阵的平均尺寸为正常衍射受限点阵聚焦点尺寸的80%。其次,将该点阵引入2P-MSIM系统,对固定在BS-C-1细胞内的微管和商用线粒体切片分别进行了超分辨成像实验,证明了在亚衍射聚焦点阵激发下,2P-MSIM的分辨率和成像质量得到了进一步提高,这对于2P-MSIM的发展具有重要意义。
生物光学 多焦点结构光照明显微 亚衍射聚焦点阵 空间光调制器 相位恢复 
中国激光
2023, 50(15): 1507103
Author Affiliations
Abstract
1 College of Physics and Optoelectronic Engineering, Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, Shenzhen University, Shenzhen 518060, Guangdong, P. R. China
2 Department of Bioengineering and COMSET, Clemson University, Clemson, SC 29634 USA
Structured illumination microscopy (SIM) is suitable for biological samples because of its relatively low-peak illumination intensity requirement and high imaging speed. The system resolution is affected by two typical detection modes: Point detection and area detection. However, a systematic analysis of the imaging performance of the different detection modes of the system has rarely been conducted. In this study, we compared laser point scanning point detection (PS-PD) and point scanning area detection (PS-AD) imaging in nonconfocal microscopy through theoretical analysis and simulated imaging. The results revealed that the imaging resolutions of PS-PD and PS-AD depend on excitation and emission point spread functions (PSFs), respectively. Especially, we combined the second harmonic generation (SHG) of point detection (P-SHG) and area detection (A-SHG) with SIM to realize a nonlinear SIM-imaging technique that improves the imaging resolution. Moreover, we analytically and experimentally compared the nonlinear SIM performance of P-SHG with that of A-SHG.
Super-resolution structured illumination microscopy second harmonic generation 
Journal of Innovative Optical Health Sciences
2023, 16(4): 2350010

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